diff --git a/debian/control b/debian/control
index be863b3..f34bdb7 100644
--- a/debian/control
+++ b/debian/control
@@ -18,8 +18,7 @@ Build-Depends: debhelper (>= 7),
                mesa-common-dev,
                libexpat1-dev | libexpat-dev,
                libglu1-mesa-dev | libglu-dev,
-               libgomp1,
-               nvidia-cuda-toolkit [amd64 i386],
+               libgomp1
 Standards-Version: 3.9.3
 Homepage: http://www.fmrib.ox.ac.uk/fsl/
 Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/fsl.git
@@ -105,7 +104,6 @@ Depends: mozilla-firefox | www-browser,
          ${shlibs:Depends},
          ${misc:Depends}
 Recommends: fsl-5.0-doc (= ${source:Version}),
-            fsl-5.0-gpu (= ${binary:Version}),
             fsl-atlases
 Suggests: fsl-feeds,
           octave | ${octave:Depends},
@@ -156,19 +154,3 @@ Description: documentation for FSL
  for FMRI, MRI and DTI brain imaging data.
  .
  This package provides the FSL documentation in HTML format.
-
-Package: fsl-5.0-gpu
-Architecture: amd64 i386
-Depends: fsl-5.0-core (= ${source:Version}),
-         ${shlibs:Depends},
-         ${misc:Depends}
-Description: GPU-accelerated tools for FSL
- FSL is a comprehensive library of image analysis and statistical tools
- for fMRI, MRI and DTI brain imaging data. The suite consists of various
- command line tools, as well as simple GUIs for its core analysis pipelines.
- Among others, FSL offers implementations of standard GLM analysis,
- white matter tractography, tissue segmentation, affine and non-linear
- co-registration, and independent component analysis.
- .
- This package provides accelerated versions of some FSL commands to utilize
- NVIDIA's CUDA toolkit.
diff --git a/debian/rules b/debian/rules
index 2916e04..abd2739 100755
--- a/debian/rules
+++ b/debian/rules
@@ -66,8 +66,7 @@ DEB_BUILD_ENV=LD_LIBRARY_PATH=$(FSL_LIBRARY_PATH)$${LD_LIBRARY_PATH:+:$${LD_LIBR
 		OPTFLAGS="$(OPTFLAGS)" \
 		ANSI_FLAGS="$(CFLAGS) $(CPPFLAGS)" \
 		DEPENDFLAGS="$(CFLAGS)" \
-		ARCHLDFLAGS="$(LDFLAGS)" \
-		COMPILE_GPU="$(COMPILE_GPU)" \
+		ARCHLDFLAGS="$(LDFLAGS)"
 		CUDA="/usr"
 
 controlfiles:
diff --git a/debian/templates/control b/debian/templates/control
index ecf78aa..eacd4d8 100644
--- a/debian/templates/control
+++ b/debian/templates/control
@@ -18,8 +18,7 @@ Build-Depends: debhelper (>= 7),
                mesa-common-dev,
                libexpat1-dev | libexpat-dev,
                libglu1-mesa-dev | libglu-dev,
-               libgomp1,
-               nvidia-cuda-toolkit [amd64 i386],
+               libgomp1
 Standards-Version: 3.9.3
 Homepage: http://www.fmrib.ox.ac.uk/fsl/
 Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/fsl.git
@@ -105,7 +104,6 @@ Depends: mozilla-firefox | www-browser,
          ${shlibs:Depends},
          ${misc:Depends}
 Recommends: fsl-#FSLMVERSION#-doc (= ${source:Version}),
-            fsl-#FSLMVERSION#-gpu (= ${binary:Version}),
             fsl-atlases
 Suggests: fsl-feeds,
           octave | ${octave:Depends},
@@ -156,19 +154,3 @@ Description: documentation for FSL
  for FMRI, MRI and DTI brain imaging data.
  .
  This package provides the FSL documentation in HTML format.
-
-Package: fsl-#FSLMVERSION#-gpu
-Architecture: amd64 i386
-Depends: fsl-#FSLMVERSION#-core (= ${source:Version}),
-         ${shlibs:Depends},
-         ${misc:Depends}
-Description: GPU-accelerated tools for FSL
- FSL is a comprehensive library of image analysis and statistical tools
- for fMRI, MRI and DTI brain imaging data. The suite consists of various
- command line tools, as well as simple GUIs for its core analysis pipelines.
- Among others, FSL offers implementations of standard GLM analysis,
- white matter tractography, tissue segmentation, affine and non-linear
- co-registration, and independent component analysis.
- .
- This package provides accelerated versions of some FSL commands to utilize
- NVIDIA's CUDA toolkit.
