##              DO NOT EDIT   
##This file is created with "make gitignore". 
##Changes should be made to sources used to create it:
##                            AFNI/.gitignore 
##                            AFNI/src/gitignore.src.txt 
##and/or the variables listing all programs in src/Makefile.INCLUDE 
##targets echo_progs, and prog_list.
##Run "make gitignore" to recreate src/.gitignore 

##Contents of master AFNI/.gitignore
#The obvious lot
CVS
.DS_Store
___*
*.o
*.so
*.dylib
*.a
*.dSYM
*junk*
*.swp
.*.swp

#Datasets
*.nii*
*.BRIK*
*.HEAD*
*.gii*
*.dset*
*.niml

#R Hidden files
*.Rout
*.args

#Miscellaneous
*.BAK

# Matlab temporary files
*.m~

# Octave workspace
octave-workspace

##Contents of gitignore.src.txt
#Things to ignore that are typically created from an AFNI make
#This list also assumes the content of .gitignore file under AFNI/
#is applied

#From AFNI builds
Makefile.back.*
volpack.h
jconfig.h
niml.h
macros.make
Makefile
Makevars
Makefile.R.INCLUDE
Makefile.R.INCLUDE.BACK
AFNI_version.txt
AFNI_version.h

#Python
*.pyc

#From SUMA/gts
*.lo
*.libs
*.deps
SUMA/gts/examples

#GLw builds
src/SUMA/GLw_local/GL
src/SUMA/GLw_local/GLw

#netcdf
netcdf-3.5.0/src/libsrc/putget.c


##Ignore all the programs and scripts
##List obtained from AFNI/src/prog_list.txt
#File content generated by 'make prog_list'
#You can compare its contents to the inferred list from:
#  apsearch -list_all_afni_progs | LC_COLLATE=C sort | uniq


1dAstrip
1dBandpass
1dBport
1dCorrelate
1dDW_Grad_o_Mat
1dFlagMotion
1dMarry
1dRplot
1dSEM
1dTsort
1dUpsample
1d_tool.py
1dcat
1ddot
1deval
1dfft
1dgenARMA11
1dgrayplot
1dmatcalc
1dnorm
1dplot
1dsum
1dsvd
1dtranspose
24swap
2dImReg
2perm
2swap
3dABoverlap
3dAFNIto3D
3dAFNItoANALYZE
3dAFNItoMINC
3dAFNItoNIFTI
3dAFNItoNIML
3dAFNItoRaw
3dANALYZEtoAFNI
3dANOVA
3dANOVA2
3dANOVA3
3dAcost
3dAllineate
3dAnatNudge
3dAnhist
3dAttribute
3dAutoTcorrelate
3dAutobox
3dAutomask
3dBRAIN_VOYAGERtoAFNI
3dBandpass
3dBlurInMask
3dBlurToFWHM
3dBrickStat
3dCM
3dCRUISEtoAFNI
3dClipLevel
3dClustCount
3dClustSim
3dConformist
3dConvolve
3dCountSpikes
3dDFT
3dDTeig
3dDTtoDWI
3dDTtoNoisyDWI
3dDWItoDT
3dDWUncert
3dDeconvolve
3dDeconvolve_f
3dDespike
3dDetrend
3dEigsToDT
3dEmpty
3dEntropy
3dErrtsCormat
3dExtrema
3dFDR
3dFFT
3dFWHM
3dFWHMx
3dFourier
3dFriedman
3dGenFeatureDist
3dGenPriors
3dGetrow
3dGroupInCorr
3dHist
3dIntracranial
3dInvFMRI
3dKruskalWallis
3dLME
3dLRflip
3dLSS
3dLocalBistat
3dLocalHistog
3dLocalPV
3dLocalSVD
3dLocalstat
3dMEMA
3dMINCtoAFNI
3dMVM
3dMannWhitney
3dMaskToASCII
3dMatch
3dMax
3dMean
3dMedianFilter
3dNLfim
3dNetCorr
3dNormalityTest
3dNotes
3dNwarpAdjust
3dNwarpApply
3dNwarpCalc
3dNwarpCat
3dNwarpFuncs
3dNwarpXYZ
3dOverlap
3dPAR2AFNI.pl
3dPFM
3dPeriodogram
3dPolyfit
3dProbTrackID
3dPval
3dQwarp
3dREMLfit
3dROIMaker
3dROIstats
3dRSFC
3dRank
3dRankizer
3dReHo
3dRegAna
3dRetinoPhase
3dRowFillin
3dRprogDemo
3dSeg
3dSetupGroupInCorr
3dSignatures
3dSkullStrip
3dSpatNorm
3dStatClust
3dSurf2Vol
3dSurfMask
3dSynthesize
3dTORTOISEtoHere
3dTRfix
3dTSgen
3dTagalign
3dTcat
3dTcorr1D
3dTcorrMap
3dTcorrelate
3dTfitter
3dThreetoRGB
3dTnorm
3dToutcount
3dToyProg
3dTproject
3dTqual
3dTrackID
3dTshift
3dTsmooth
3dTsort
3dTstat
3dTwotoComplex
3dUndump
3dUnifize
3dUniformize
3dUpsample
3dVec_to_RGBind
3dVol2Surf
3dWarp
3dWarpDrive
3dWavelets
3dWilcoxon
3dWinsor
3dXYZcat
3dZcat
3dZcutup
3dZeropad
3dZregrid
3danisosmooth
3daxialize
3dbuc2fim
3dbucket
3dcalc
3dclust
3dcopy
3ddelay
3ddot
3ddot_beta
3ddup
3dedge3
3dfim
3dfim+
3dfractionize
3dhistog
3dinfill
3dinfo
3dkmeans
3dmaskSVD
3dmask_tool
3dmaskave
3dmaskdump
3dmatcalc
3dmatmult
3dmaxima
3dmerge
3dnewid
3dnoise
3dnvals
3dpc
3dproject
3drefit
3drename
3dresample
3dretroicor
3drotate
3dsvm
3dttest
3dttest++
3dvolreg
4swap
@1dDiffMag
@2dwarper
@2dwarper.Allin
@4Daverage
@ANATICOR
@AddEdge
@AfniEnv
@AfniOrient2RAImap
@AfniOrientSign
@Align_Centers
@Atlasize
@Center_Distance
@CheckForAfniDset
@CommandGlobb
@DO.examples
@DTI_studio_reposition
@DeblankFileNames
@DiceMetric
@DriveAfni
@DriveSuma
@ElectroGrid
@ExamineGenFeatDists
@FS_roi_label
@FSlabel2dset
@FindAfniDsetPath
@FromRAI
@FullPath
@GetAfniBin
@GetAfniDims
@GetAfniID
@GetAfniOrient
@GetAfniPrefix
@GetAfniRes
@GetAfniView
@GradFlipTest
@Install_3dPFM_Demo
@Install_AfniRetinoDemo
@Install_ClustScat_Demo
@Install_DBSproc
@Install_FATCAT_DEMO
@Install_FATMVM_DEMO
@Install_InstaCorr_Demo
@Install_MEICA_Demo
@Install_RSFMRI_Motion_Group_Demo
@Install_TSrestMovieDemo
@IsoMasks
@MakeLabelTable
@NoExt
@NoPound
@NoisySkullStrip
@Purify_1D
@Quiet_Talkers
@ROI_Corr_Mat
@R_funclist
@RenamePanga
@Reorder
@RetinoProc
@SUMA_AlignToExperiment
@SUMA_FSvolToBRIK
@SUMA_Make_Spec_Caret
@SUMA_Make_Spec_FS
@SUMA_Make_Spec_SF
@ScaleVolume
@ScriptCheck
@Shift_Volume
@ShowDynamicRange
@Spharm.examples
@SurfSmooth.HEAT_07.examples
@T1scale
@TimeDiff
@ToRAI
@UpdateAfni
@VolCenter
@afni.run.me
@align_partial_oblique
@auto_align
@auto_tlrc
@build_afni_Xlib
@clean_help_dir
@clip_volume
@compute_gcor
@demo_prompt
@diff.files
@diff.tree
@escape-
@fast_roi
@fix_FSsphere
@float_fix
@global_parse
@help.AFNI
@isOblique
@make_plug_diff
@make_stim_file
@move.to.series.dirs
@np
@parse_afni_name
@parse_name
@radial_correlate
@simulate_motion
@statauxcode
@toMNI_Awarp
@toMNI_Qwarpar
@update.afni.binaries
AFNI_Batch_R
AlphaSim
AnalyzeTrace
BrainSkin
CompareSurfaces
ConvertDset
ConvertSurface
ConvexHull
CreateIcosahedron
DTIStudioFibertoSegments
Dimon
Dimon1
DriveSuma
ExamineXmat
FD2
FIRdesign
FSread_annot
GLTsymtest
HalloSuma
Ifile
InstaTract
IsoSurface
MakeColorMap
MapIcosahedron
ParseName
ROI2dataset
ROIgrow
RSFgen
SUMA_glxdino
SUMA_paperplane
SUMA_pixmap2eps
SampBias
ScaleToMap
SpharmDeco
SpharmReco
Surf2VolCoord
SurfClust
SurfDist
SurfDsetInfo
SurfExtrema
SurfFWHM
SurfInfo
SurfMeasures
SurfMesh
SurfPatch
SurfQual
SurfRetinoMap
SurfSmooth
SurfToSurf
SurfaceMetrics
Vecwarp
Xphace
abut
adwarp
afni
afni_history
afni_open
afni_proc.py
afni_restproc.py
afni_run_R
afni_skeleton.py
afni_system_check.py
afni_vcheck
aiv
align_epi_anat.py
apsearch
auto_warp.py
balloon
byteorder
cat_matvec
ccalc
cdf
cifti_tool
cjpeg
column_cat
count
demo.fixed.niml.do
demo.mobile.niml.do
dicom_hdr
dicom_hinfo
dicom_to_raw
djpeg
eg_main_chrono.py
ent16
fat_lat_csv.py
fat_mat_sel.py
fat_mvm_gridconv.py
fat_mvm_prep.py
fat_mvm_review.py
fat_mvm_scripter.py
fat_roi_row.py
fdrval
fftest
file_tool
fim2
float_scan
from3d
ftosh
ge_header
gen_epi_review.py
gen_group_command.py
gen_ss_review_scripts.py
gen_ss_review_table.py
gifti_tool
help_format
im2niml
images_equal
imand
imaver
imcalc
imcat
imcutup
imdump
immask
imreg
imrotate
imstack
imstat
imupsam
inspec
make_pq_script.py
make_random_timing.py
make_stim_times.py
map_TrackID
mayo_analyze
meica.py
mpeg_encode
mritopgm
mycat
myget
neuro_deconvolve.py
nicat
niccc
nifti1_test
nifti1_tool
nifti_tool
niml_feedme
niprobe
nsize
plugout_drive
plugout_ijk
plugout_tt
plugout_tta
prompt_user
python_module_test.py
qdelaunay
qhull
quick.alpha.vals.py
quickspec
quotize
rPkgsInstall
rbox
read_matlab_files.py
realtime_receiver.py
rmz
rotcom
rtfeedme
serial_helper
sfim
siemens_vision
slow_surf_clustsim.py
sqwave
stimband
strblast
suma
suma_change_spec
testGL
tfim
timing_tool.py
to3d
uber_align_test.py
uber_proc.py
uber_skel.py
uber_subject.py
uber_ttest.py
uniq_images
waver
whereami
whirlgif
xmat_tool.py
